Renaming columns using geopandas - issues with data table in Arc












1















What I'm trying to achieve:




  • Read in an existing ESRI polygon shapefile

  • Drop an attribute

  • Dissolve by another attribute

  • Rename columns

  • Reorder columns

  • Write out as new shapefile


What works: Drop column and dissolve all work - I've run these steps and written to file. This opens fine in ArcMap, I can identify things, open the attribute table etc. No issues.



Problem: When I rename (not got to the reorder step without error yet) the columns, everything runs fine and I write to file. When then opening the shapefile in ArcMap (10.3.1) I can query layers using the Identify cursor which shows my renamed attributes as they should be BUT when trying to open the attribute table, I get the following message in a window:



Loading table data



Could not load data from the data source. If you can correct the problem, press the refresh button to reload data. Possible problems can include bad network connection, invalid file, etc.



A column was specified that doesn't exists.



A column was specified that doesn't exists.



So, it looks like something is missing or my changes are not being mapped across the shapefile components. I can't share the data but can share the code. The problem is with the renaming... What am I missing?



import geopandas as gp

# Read data in
f="my_file"
data = gp.read_file(f)

# Drop a column (if writing out file here, does as expected)
data=data.drop(['CLASS'], axis=1)

# Do the dissolve (if writing out file here, does as expected)
data=data.dissolve(by='Hazard_Pot', as_index=False)

# Rename (THE PROBLEM I THINK : if saving here, I get my issue in ArcMap)
data=data.rename(index=str, columns={"Hazard_Pot":"Potential",
"casualties":"Casualty",
"vehicle_ac":"Access",
"building d":"Damage",
"disruption":"Disruption",
"contaminat":"Contam.",
"do_not_1":"Do_Not_1"})

# Reorder
data=data[['Potential',
'Casualty',
'Access',
'Damage',
'Disruption',
'Contam.',
'Do_Not_1',
'geometry']]

# write to file (creating a new CRS based on the old as per https://gis.stackexchange.com/questions/204201/geopandas-to-file-saves-geodataframe-without-coordinate-system?noredirect=1&lq=1)
prj_file = "%s.prj" %os.path.splitext(f)[0]
prj = [l.strip() for l in open(prj_file,'r')][0]
data.to_file(ofile, driver=driver, crs_wkt=prj)









share|improve this question























  • data.rename(index=str... renaming the index to a data type is very strange. Take that part out and report back

    – Paul H
    8 hours ago











  • I can't share the data but can share the code and you can share fake data that reproduces the issue

    – Paul H
    8 hours ago











  • @PaulH i belive index=str is correct syntax, see the examples in help section of rename. But I also think that part is not needed.

    – BERA
    8 hours ago













  • @BERA Oops - forgot rename could take callables.

    – Paul H
    7 hours ago
















1















What I'm trying to achieve:




  • Read in an existing ESRI polygon shapefile

  • Drop an attribute

  • Dissolve by another attribute

  • Rename columns

  • Reorder columns

  • Write out as new shapefile


What works: Drop column and dissolve all work - I've run these steps and written to file. This opens fine in ArcMap, I can identify things, open the attribute table etc. No issues.



Problem: When I rename (not got to the reorder step without error yet) the columns, everything runs fine and I write to file. When then opening the shapefile in ArcMap (10.3.1) I can query layers using the Identify cursor which shows my renamed attributes as they should be BUT when trying to open the attribute table, I get the following message in a window:



Loading table data



Could not load data from the data source. If you can correct the problem, press the refresh button to reload data. Possible problems can include bad network connection, invalid file, etc.



A column was specified that doesn't exists.



A column was specified that doesn't exists.



So, it looks like something is missing or my changes are not being mapped across the shapefile components. I can't share the data but can share the code. The problem is with the renaming... What am I missing?



import geopandas as gp

# Read data in
f="my_file"
data = gp.read_file(f)

# Drop a column (if writing out file here, does as expected)
data=data.drop(['CLASS'], axis=1)

# Do the dissolve (if writing out file here, does as expected)
data=data.dissolve(by='Hazard_Pot', as_index=False)

# Rename (THE PROBLEM I THINK : if saving here, I get my issue in ArcMap)
data=data.rename(index=str, columns={"Hazard_Pot":"Potential",
"casualties":"Casualty",
"vehicle_ac":"Access",
"building d":"Damage",
"disruption":"Disruption",
"contaminat":"Contam.",
"do_not_1":"Do_Not_1"})

# Reorder
data=data[['Potential',
'Casualty',
'Access',
'Damage',
'Disruption',
'Contam.',
'Do_Not_1',
'geometry']]

# write to file (creating a new CRS based on the old as per https://gis.stackexchange.com/questions/204201/geopandas-to-file-saves-geodataframe-without-coordinate-system?noredirect=1&lq=1)
prj_file = "%s.prj" %os.path.splitext(f)[0]
prj = [l.strip() for l in open(prj_file,'r')][0]
data.to_file(ofile, driver=driver, crs_wkt=prj)









share|improve this question























  • data.rename(index=str... renaming the index to a data type is very strange. Take that part out and report back

    – Paul H
    8 hours ago











  • I can't share the data but can share the code and you can share fake data that reproduces the issue

    – Paul H
    8 hours ago











  • @PaulH i belive index=str is correct syntax, see the examples in help section of rename. But I also think that part is not needed.

    – BERA
    8 hours ago













  • @BERA Oops - forgot rename could take callables.

    – Paul H
    7 hours ago














1












1








1








What I'm trying to achieve:




  • Read in an existing ESRI polygon shapefile

  • Drop an attribute

  • Dissolve by another attribute

  • Rename columns

  • Reorder columns

  • Write out as new shapefile


What works: Drop column and dissolve all work - I've run these steps and written to file. This opens fine in ArcMap, I can identify things, open the attribute table etc. No issues.



Problem: When I rename (not got to the reorder step without error yet) the columns, everything runs fine and I write to file. When then opening the shapefile in ArcMap (10.3.1) I can query layers using the Identify cursor which shows my renamed attributes as they should be BUT when trying to open the attribute table, I get the following message in a window:



Loading table data



Could not load data from the data source. If you can correct the problem, press the refresh button to reload data. Possible problems can include bad network connection, invalid file, etc.



A column was specified that doesn't exists.



A column was specified that doesn't exists.



So, it looks like something is missing or my changes are not being mapped across the shapefile components. I can't share the data but can share the code. The problem is with the renaming... What am I missing?



import geopandas as gp

# Read data in
f="my_file"
data = gp.read_file(f)

# Drop a column (if writing out file here, does as expected)
data=data.drop(['CLASS'], axis=1)

# Do the dissolve (if writing out file here, does as expected)
data=data.dissolve(by='Hazard_Pot', as_index=False)

# Rename (THE PROBLEM I THINK : if saving here, I get my issue in ArcMap)
data=data.rename(index=str, columns={"Hazard_Pot":"Potential",
"casualties":"Casualty",
"vehicle_ac":"Access",
"building d":"Damage",
"disruption":"Disruption",
"contaminat":"Contam.",
"do_not_1":"Do_Not_1"})

# Reorder
data=data[['Potential',
'Casualty',
'Access',
'Damage',
'Disruption',
'Contam.',
'Do_Not_1',
'geometry']]

# write to file (creating a new CRS based on the old as per https://gis.stackexchange.com/questions/204201/geopandas-to-file-saves-geodataframe-without-coordinate-system?noredirect=1&lq=1)
prj_file = "%s.prj" %os.path.splitext(f)[0]
prj = [l.strip() for l in open(prj_file,'r')][0]
data.to_file(ofile, driver=driver, crs_wkt=prj)









share|improve this question














What I'm trying to achieve:




  • Read in an existing ESRI polygon shapefile

  • Drop an attribute

  • Dissolve by another attribute

  • Rename columns

  • Reorder columns

  • Write out as new shapefile


What works: Drop column and dissolve all work - I've run these steps and written to file. This opens fine in ArcMap, I can identify things, open the attribute table etc. No issues.



Problem: When I rename (not got to the reorder step without error yet) the columns, everything runs fine and I write to file. When then opening the shapefile in ArcMap (10.3.1) I can query layers using the Identify cursor which shows my renamed attributes as they should be BUT when trying to open the attribute table, I get the following message in a window:



Loading table data



Could not load data from the data source. If you can correct the problem, press the refresh button to reload data. Possible problems can include bad network connection, invalid file, etc.



A column was specified that doesn't exists.



A column was specified that doesn't exists.



So, it looks like something is missing or my changes are not being mapped across the shapefile components. I can't share the data but can share the code. The problem is with the renaming... What am I missing?



import geopandas as gp

# Read data in
f="my_file"
data = gp.read_file(f)

# Drop a column (if writing out file here, does as expected)
data=data.drop(['CLASS'], axis=1)

# Do the dissolve (if writing out file here, does as expected)
data=data.dissolve(by='Hazard_Pot', as_index=False)

# Rename (THE PROBLEM I THINK : if saving here, I get my issue in ArcMap)
data=data.rename(index=str, columns={"Hazard_Pot":"Potential",
"casualties":"Casualty",
"vehicle_ac":"Access",
"building d":"Damage",
"disruption":"Disruption",
"contaminat":"Contam.",
"do_not_1":"Do_Not_1"})

# Reorder
data=data[['Potential',
'Casualty',
'Access',
'Damage',
'Disruption',
'Contam.',
'Do_Not_1',
'geometry']]

# write to file (creating a new CRS based on the old as per https://gis.stackexchange.com/questions/204201/geopandas-to-file-saves-geodataframe-without-coordinate-system?noredirect=1&lq=1)
prj_file = "%s.prj" %os.path.splitext(f)[0]
prj = [l.strip() for l in open(prj_file,'r')][0]
data.to_file(ofile, driver=driver, crs_wkt=prj)






python shapefile geopandas






share|improve this question













share|improve this question











share|improve this question




share|improve this question










asked 8 hours ago









ChrisWillsChrisWills

506




506













  • data.rename(index=str... renaming the index to a data type is very strange. Take that part out and report back

    – Paul H
    8 hours ago











  • I can't share the data but can share the code and you can share fake data that reproduces the issue

    – Paul H
    8 hours ago











  • @PaulH i belive index=str is correct syntax, see the examples in help section of rename. But I also think that part is not needed.

    – BERA
    8 hours ago













  • @BERA Oops - forgot rename could take callables.

    – Paul H
    7 hours ago



















  • data.rename(index=str... renaming the index to a data type is very strange. Take that part out and report back

    – Paul H
    8 hours ago











  • I can't share the data but can share the code and you can share fake data that reproduces the issue

    – Paul H
    8 hours ago











  • @PaulH i belive index=str is correct syntax, see the examples in help section of rename. But I also think that part is not needed.

    – BERA
    8 hours ago













  • @BERA Oops - forgot rename could take callables.

    – Paul H
    7 hours ago

















data.rename(index=str... renaming the index to a data type is very strange. Take that part out and report back

– Paul H
8 hours ago





data.rename(index=str... renaming the index to a data type is very strange. Take that part out and report back

– Paul H
8 hours ago













I can't share the data but can share the code and you can share fake data that reproduces the issue

– Paul H
8 hours ago





I can't share the data but can share the code and you can share fake data that reproduces the issue

– Paul H
8 hours ago













@PaulH i belive index=str is correct syntax, see the examples in help section of rename. But I also think that part is not needed.

– BERA
8 hours ago







@PaulH i belive index=str is correct syntax, see the examples in help section of rename. But I also think that part is not needed.

– BERA
8 hours ago















@BERA Oops - forgot rename could take callables.

– Paul H
7 hours ago





@BERA Oops - forgot rename could take callables.

– Paul H
7 hours ago










1 Answer
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oldest

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4














Looking at your code I can see two things that Arcmap doesn't like:




  • The first one is the space in the field name "building d";

  • The second one - and the cause of the error - is the . in "contaminat":"Contam.".


I was able to reproduce the error by creating a test file and using your code. Removing the dot "contaminat":"Contam" solved the problem.






share|improve this answer








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Mouad Alami is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
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    1 Answer
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    active

    oldest

    votes








    1 Answer
    1






    active

    oldest

    votes









    active

    oldest

    votes






    active

    oldest

    votes









    4














    Looking at your code I can see two things that Arcmap doesn't like:




    • The first one is the space in the field name "building d";

    • The second one - and the cause of the error - is the . in "contaminat":"Contam.".


    I was able to reproduce the error by creating a test file and using your code. Removing the dot "contaminat":"Contam" solved the problem.






    share|improve this answer








    New contributor




    Mouad Alami is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
    Check out our Code of Conduct.

























      4














      Looking at your code I can see two things that Arcmap doesn't like:




      • The first one is the space in the field name "building d";

      • The second one - and the cause of the error - is the . in "contaminat":"Contam.".


      I was able to reproduce the error by creating a test file and using your code. Removing the dot "contaminat":"Contam" solved the problem.






      share|improve this answer








      New contributor




      Mouad Alami is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
      Check out our Code of Conduct.























        4












        4








        4







        Looking at your code I can see two things that Arcmap doesn't like:




        • The first one is the space in the field name "building d";

        • The second one - and the cause of the error - is the . in "contaminat":"Contam.".


        I was able to reproduce the error by creating a test file and using your code. Removing the dot "contaminat":"Contam" solved the problem.






        share|improve this answer








        New contributor




        Mouad Alami is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
        Check out our Code of Conduct.










        Looking at your code I can see two things that Arcmap doesn't like:




        • The first one is the space in the field name "building d";

        • The second one - and the cause of the error - is the . in "contaminat":"Contam.".


        I was able to reproduce the error by creating a test file and using your code. Removing the dot "contaminat":"Contam" solved the problem.







        share|improve this answer








        New contributor




        Mouad Alami is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
        Check out our Code of Conduct.









        share|improve this answer



        share|improve this answer






        New contributor




        Mouad Alami is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
        Check out our Code of Conduct.









        answered 8 hours ago









        Mouad AlamiMouad Alami

        994




        994




        New contributor




        Mouad Alami is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
        Check out our Code of Conduct.





        New contributor





        Mouad Alami is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
        Check out our Code of Conduct.






        Mouad Alami is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
        Check out our Code of Conduct.






























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