Keras ValueError: Error when checking target: expected dense_15 to have 3 dimensions, but got array with...












0














I have 8 classes that I want to predict from input text. Here is my code for preprocessing the data:



num_max = 1000
tok = Tokenizer(num_words=num_max)
tok.fit_on_texts(x_train)
mat_texts = tok.texts_to_matrix(x_train,mode='count')
num_max = 1000
tok = Tokenizer(num_words=num_max)
tok.fit_on_texts(x_train)
max_len = 100
cnn_texts_seq = tok.texts_to_sequences(x_train)
print(cnn_texts_seq[0])

[12, 4, 303]

# padding the sequences
cnn_texts_mat = sequence.pad_sequences(cnn_texts_seq,maxlen=max_len)
print(cnn_texts_mat[0])
print(cnn_texts_mat.shape)

[ 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 12 4 303]

(301390, 100)


Below is the structure of my model which contains an embedding layer:



max_features = 20000
max_features = cnn_texts_mat.shape[1]
maxlen = 100
embedding_size = 128


model = Sequential()
model.add(Embedding(max_features, embedding_size, input_length=maxlen))
model.add(Dropout(0.2))

model.add(Dense(5000, activation='relu'))
model.add(Dropout(0.1))
model.add(Dense(600, activation='relu'))
model.add(Dropout(0.1))
model.add(Dense(units=y_train.shape[1], activation='softmax'))

sgd = SGD(lr=0.01, decay=1e-6, momentum=0.9, nesterov=True)
model.compile(loss='binary_crossentropy',
optimizer=sgd)


Below is the model summary:



model.summary()
_________________________________________________________________
Layer (type) Output Shape Param #
=================================================================
embedding_5 (Embedding) (None, 100, 128) 12800
_________________________________________________________________
dropout_13 (Dropout) (None, 100, 128) 0
_________________________________________________________________
dense_13 (Dense) (None, 100, 5000) 645000
_________________________________________________________________
dropout_14 (Dropout) (None, 100, 5000) 0
_________________________________________________________________
dense_14 (Dense) (None, 100, 600) 3000600
_________________________________________________________________
dropout_15 (Dropout) (None, 100, 600) 0
_________________________________________________________________
dense_15 (Dense) (None, 100, 8) 4808
=================================================================
Total params: 3,663,208
Trainable params: 3,663,208
Non-trainable params: 0


After this, I am getting below error when I try to run the model:



model.fit(x=cnn_texts_mat, y=y_train, epochs=2, batch_size=100)

ValueError Traceback (most recent call last)
<ipython-input-41-4b9da9914e7e> in <module>
----> 1 model.fit(x=cnn_texts_mat, y=y_train, epochs=2, batch_size=100)

~/.local/lib/python3.5/site-packages/keras/engine/training.py in fit(self, x, y, batch_size, epochs, verbose, callbacks, validation_split, validation_data, shuffle, class_weight, sample_weight, initial_epoch, steps_per_epoch, validation_steps, **kwargs)
950 sample_weight=sample_weight,
951 class_weight=class_weight,
--> 952 batch_size=batch_size)
953 # Prepare validation data.
954 do_validation = False

~/.local/lib/python3.5/site-packages/keras/engine/training.py in _standardize_user_data(self, x, y, sample_weight, class_weight, check_array_lengths, batch_size)
787 feed_output_shapes,
788 check_batch_axis=False, # Don't enforce the batch size.
--> 789 exception_prefix='target')
790
791 # Generate sample-wise weight values given the `sample_weight` and

~/.local/lib/python3.5/site-packages/keras/engine/training_utils.py in standardize_input_data(data, names, shapes, check_batch_axis, exception_prefix)
126 ': expected ' + names[i] + ' to have ' +
127 str(len(shape)) + ' dimensions, but got array '
--> 128 'with shape ' + str(data_shape))
129 if not check_batch_axis:
130 data_shape = data_shape[1:]

ValueError: Error when checking target: expected dense_15 to have 3 dimensions, but got array with shape (301390, 8)









share|improve this question





























    0














    I have 8 classes that I want to predict from input text. Here is my code for preprocessing the data:



    num_max = 1000
    tok = Tokenizer(num_words=num_max)
    tok.fit_on_texts(x_train)
    mat_texts = tok.texts_to_matrix(x_train,mode='count')
    num_max = 1000
    tok = Tokenizer(num_words=num_max)
    tok.fit_on_texts(x_train)
    max_len = 100
    cnn_texts_seq = tok.texts_to_sequences(x_train)
    print(cnn_texts_seq[0])

    [12, 4, 303]

    # padding the sequences
    cnn_texts_mat = sequence.pad_sequences(cnn_texts_seq,maxlen=max_len)
    print(cnn_texts_mat[0])
    print(cnn_texts_mat.shape)

    [ 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
    0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
    0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
    0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
    0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
    0 0 0 0 0 0 0 12 4 303]

    (301390, 100)


    Below is the structure of my model which contains an embedding layer:



    max_features = 20000
    max_features = cnn_texts_mat.shape[1]
    maxlen = 100
    embedding_size = 128


    model = Sequential()
    model.add(Embedding(max_features, embedding_size, input_length=maxlen))
    model.add(Dropout(0.2))

    model.add(Dense(5000, activation='relu'))
    model.add(Dropout(0.1))
    model.add(Dense(600, activation='relu'))
    model.add(Dropout(0.1))
    model.add(Dense(units=y_train.shape[1], activation='softmax'))

    sgd = SGD(lr=0.01, decay=1e-6, momentum=0.9, nesterov=True)
    model.compile(loss='binary_crossentropy',
    optimizer=sgd)


    Below is the model summary:



    model.summary()
    _________________________________________________________________
    Layer (type) Output Shape Param #
    =================================================================
    embedding_5 (Embedding) (None, 100, 128) 12800
    _________________________________________________________________
    dropout_13 (Dropout) (None, 100, 128) 0
    _________________________________________________________________
    dense_13 (Dense) (None, 100, 5000) 645000
    _________________________________________________________________
    dropout_14 (Dropout) (None, 100, 5000) 0
    _________________________________________________________________
    dense_14 (Dense) (None, 100, 600) 3000600
    _________________________________________________________________
    dropout_15 (Dropout) (None, 100, 600) 0
    _________________________________________________________________
    dense_15 (Dense) (None, 100, 8) 4808
    =================================================================
    Total params: 3,663,208
    Trainable params: 3,663,208
    Non-trainable params: 0


    After this, I am getting below error when I try to run the model:



    model.fit(x=cnn_texts_mat, y=y_train, epochs=2, batch_size=100)

    ValueError Traceback (most recent call last)
    <ipython-input-41-4b9da9914e7e> in <module>
    ----> 1 model.fit(x=cnn_texts_mat, y=y_train, epochs=2, batch_size=100)

    ~/.local/lib/python3.5/site-packages/keras/engine/training.py in fit(self, x, y, batch_size, epochs, verbose, callbacks, validation_split, validation_data, shuffle, class_weight, sample_weight, initial_epoch, steps_per_epoch, validation_steps, **kwargs)
    950 sample_weight=sample_weight,
    951 class_weight=class_weight,
    --> 952 batch_size=batch_size)
    953 # Prepare validation data.
    954 do_validation = False

    ~/.local/lib/python3.5/site-packages/keras/engine/training.py in _standardize_user_data(self, x, y, sample_weight, class_weight, check_array_lengths, batch_size)
    787 feed_output_shapes,
    788 check_batch_axis=False, # Don't enforce the batch size.
    --> 789 exception_prefix='target')
    790
    791 # Generate sample-wise weight values given the `sample_weight` and

    ~/.local/lib/python3.5/site-packages/keras/engine/training_utils.py in standardize_input_data(data, names, shapes, check_batch_axis, exception_prefix)
    126 ': expected ' + names[i] + ' to have ' +
    127 str(len(shape)) + ' dimensions, but got array '
    --> 128 'with shape ' + str(data_shape))
    129 if not check_batch_axis:
    130 data_shape = data_shape[1:]

    ValueError: Error when checking target: expected dense_15 to have 3 dimensions, but got array with shape (301390, 8)









    share|improve this question



























      0












      0








      0







      I have 8 classes that I want to predict from input text. Here is my code for preprocessing the data:



      num_max = 1000
      tok = Tokenizer(num_words=num_max)
      tok.fit_on_texts(x_train)
      mat_texts = tok.texts_to_matrix(x_train,mode='count')
      num_max = 1000
      tok = Tokenizer(num_words=num_max)
      tok.fit_on_texts(x_train)
      max_len = 100
      cnn_texts_seq = tok.texts_to_sequences(x_train)
      print(cnn_texts_seq[0])

      [12, 4, 303]

      # padding the sequences
      cnn_texts_mat = sequence.pad_sequences(cnn_texts_seq,maxlen=max_len)
      print(cnn_texts_mat[0])
      print(cnn_texts_mat.shape)

      [ 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
      0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
      0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
      0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
      0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
      0 0 0 0 0 0 0 12 4 303]

      (301390, 100)


      Below is the structure of my model which contains an embedding layer:



      max_features = 20000
      max_features = cnn_texts_mat.shape[1]
      maxlen = 100
      embedding_size = 128


      model = Sequential()
      model.add(Embedding(max_features, embedding_size, input_length=maxlen))
      model.add(Dropout(0.2))

      model.add(Dense(5000, activation='relu'))
      model.add(Dropout(0.1))
      model.add(Dense(600, activation='relu'))
      model.add(Dropout(0.1))
      model.add(Dense(units=y_train.shape[1], activation='softmax'))

      sgd = SGD(lr=0.01, decay=1e-6, momentum=0.9, nesterov=True)
      model.compile(loss='binary_crossentropy',
      optimizer=sgd)


      Below is the model summary:



      model.summary()
      _________________________________________________________________
      Layer (type) Output Shape Param #
      =================================================================
      embedding_5 (Embedding) (None, 100, 128) 12800
      _________________________________________________________________
      dropout_13 (Dropout) (None, 100, 128) 0
      _________________________________________________________________
      dense_13 (Dense) (None, 100, 5000) 645000
      _________________________________________________________________
      dropout_14 (Dropout) (None, 100, 5000) 0
      _________________________________________________________________
      dense_14 (Dense) (None, 100, 600) 3000600
      _________________________________________________________________
      dropout_15 (Dropout) (None, 100, 600) 0
      _________________________________________________________________
      dense_15 (Dense) (None, 100, 8) 4808
      =================================================================
      Total params: 3,663,208
      Trainable params: 3,663,208
      Non-trainable params: 0


      After this, I am getting below error when I try to run the model:



      model.fit(x=cnn_texts_mat, y=y_train, epochs=2, batch_size=100)

      ValueError Traceback (most recent call last)
      <ipython-input-41-4b9da9914e7e> in <module>
      ----> 1 model.fit(x=cnn_texts_mat, y=y_train, epochs=2, batch_size=100)

      ~/.local/lib/python3.5/site-packages/keras/engine/training.py in fit(self, x, y, batch_size, epochs, verbose, callbacks, validation_split, validation_data, shuffle, class_weight, sample_weight, initial_epoch, steps_per_epoch, validation_steps, **kwargs)
      950 sample_weight=sample_weight,
      951 class_weight=class_weight,
      --> 952 batch_size=batch_size)
      953 # Prepare validation data.
      954 do_validation = False

      ~/.local/lib/python3.5/site-packages/keras/engine/training.py in _standardize_user_data(self, x, y, sample_weight, class_weight, check_array_lengths, batch_size)
      787 feed_output_shapes,
      788 check_batch_axis=False, # Don't enforce the batch size.
      --> 789 exception_prefix='target')
      790
      791 # Generate sample-wise weight values given the `sample_weight` and

      ~/.local/lib/python3.5/site-packages/keras/engine/training_utils.py in standardize_input_data(data, names, shapes, check_batch_axis, exception_prefix)
      126 ': expected ' + names[i] + ' to have ' +
      127 str(len(shape)) + ' dimensions, but got array '
      --> 128 'with shape ' + str(data_shape))
      129 if not check_batch_axis:
      130 data_shape = data_shape[1:]

      ValueError: Error when checking target: expected dense_15 to have 3 dimensions, but got array with shape (301390, 8)









      share|improve this question















      I have 8 classes that I want to predict from input text. Here is my code for preprocessing the data:



      num_max = 1000
      tok = Tokenizer(num_words=num_max)
      tok.fit_on_texts(x_train)
      mat_texts = tok.texts_to_matrix(x_train,mode='count')
      num_max = 1000
      tok = Tokenizer(num_words=num_max)
      tok.fit_on_texts(x_train)
      max_len = 100
      cnn_texts_seq = tok.texts_to_sequences(x_train)
      print(cnn_texts_seq[0])

      [12, 4, 303]

      # padding the sequences
      cnn_texts_mat = sequence.pad_sequences(cnn_texts_seq,maxlen=max_len)
      print(cnn_texts_mat[0])
      print(cnn_texts_mat.shape)

      [ 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
      0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
      0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
      0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
      0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
      0 0 0 0 0 0 0 12 4 303]

      (301390, 100)


      Below is the structure of my model which contains an embedding layer:



      max_features = 20000
      max_features = cnn_texts_mat.shape[1]
      maxlen = 100
      embedding_size = 128


      model = Sequential()
      model.add(Embedding(max_features, embedding_size, input_length=maxlen))
      model.add(Dropout(0.2))

      model.add(Dense(5000, activation='relu'))
      model.add(Dropout(0.1))
      model.add(Dense(600, activation='relu'))
      model.add(Dropout(0.1))
      model.add(Dense(units=y_train.shape[1], activation='softmax'))

      sgd = SGD(lr=0.01, decay=1e-6, momentum=0.9, nesterov=True)
      model.compile(loss='binary_crossentropy',
      optimizer=sgd)


      Below is the model summary:



      model.summary()
      _________________________________________________________________
      Layer (type) Output Shape Param #
      =================================================================
      embedding_5 (Embedding) (None, 100, 128) 12800
      _________________________________________________________________
      dropout_13 (Dropout) (None, 100, 128) 0
      _________________________________________________________________
      dense_13 (Dense) (None, 100, 5000) 645000
      _________________________________________________________________
      dropout_14 (Dropout) (None, 100, 5000) 0
      _________________________________________________________________
      dense_14 (Dense) (None, 100, 600) 3000600
      _________________________________________________________________
      dropout_15 (Dropout) (None, 100, 600) 0
      _________________________________________________________________
      dense_15 (Dense) (None, 100, 8) 4808
      =================================================================
      Total params: 3,663,208
      Trainable params: 3,663,208
      Non-trainable params: 0


      After this, I am getting below error when I try to run the model:



      model.fit(x=cnn_texts_mat, y=y_train, epochs=2, batch_size=100)

      ValueError Traceback (most recent call last)
      <ipython-input-41-4b9da9914e7e> in <module>
      ----> 1 model.fit(x=cnn_texts_mat, y=y_train, epochs=2, batch_size=100)

      ~/.local/lib/python3.5/site-packages/keras/engine/training.py in fit(self, x, y, batch_size, epochs, verbose, callbacks, validation_split, validation_data, shuffle, class_weight, sample_weight, initial_epoch, steps_per_epoch, validation_steps, **kwargs)
      950 sample_weight=sample_weight,
      951 class_weight=class_weight,
      --> 952 batch_size=batch_size)
      953 # Prepare validation data.
      954 do_validation = False

      ~/.local/lib/python3.5/site-packages/keras/engine/training.py in _standardize_user_data(self, x, y, sample_weight, class_weight, check_array_lengths, batch_size)
      787 feed_output_shapes,
      788 check_batch_axis=False, # Don't enforce the batch size.
      --> 789 exception_prefix='target')
      790
      791 # Generate sample-wise weight values given the `sample_weight` and

      ~/.local/lib/python3.5/site-packages/keras/engine/training_utils.py in standardize_input_data(data, names, shapes, check_batch_axis, exception_prefix)
      126 ': expected ' + names[i] + ' to have ' +
      127 str(len(shape)) + ' dimensions, but got array '
      --> 128 'with shape ' + str(data_shape))
      129 if not check_batch_axis:
      130 data_shape = data_shape[1:]

      ValueError: Error when checking target: expected dense_15 to have 3 dimensions, but got array with shape (301390, 8)






      python machine-learning keras deep-learning nlp






      share|improve this question















      share|improve this question













      share|improve this question




      share|improve this question








      edited Nov 23 at 12:30









      today

      9,61121535




      9,61121535










      asked Nov 23 at 9:02









      Enthusiast

      864623




      864623
























          1 Answer
          1






          active

          oldest

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          1














          Look at the output shape of the last layer in model summary: it is (None, 100, 8). This is not what you are looking for. Your labels for each sample have a shape of (8,) and not (100,8). Why this happened? That's because the Dense layer is applied on the last axis of its input and therefore since the output of Embedding layer is 3D, the output of all the following Dense layers would also have 3 dimension.



          How to resolve this? One approach is to use Flatten layer somewhere in your model (possibly right after the embedding layer). This way you would have a 2D ouput of shape (None, 8) which is what you want and is consistent with the shape of labels.



          However, note that you may end up with a very big model (i.e. too many parameters) which would be highly prone to overfitting. Either reduce the number of units in the Dense layers or alternatively use Conv1D and MaxPooling1D layers or even RNN layers to process the embeddings and reduce the dimensionality of resulting tensors (which is also probable that using them would also increase the accuracy of the model as well).






          share|improve this answer





















          • Thanks! I went with Conv1D model and it worked fine.
            – Enthusiast
            Nov 27 at 10:38











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          1 Answer
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          1 Answer
          1






          active

          oldest

          votes









          active

          oldest

          votes






          active

          oldest

          votes









          1














          Look at the output shape of the last layer in model summary: it is (None, 100, 8). This is not what you are looking for. Your labels for each sample have a shape of (8,) and not (100,8). Why this happened? That's because the Dense layer is applied on the last axis of its input and therefore since the output of Embedding layer is 3D, the output of all the following Dense layers would also have 3 dimension.



          How to resolve this? One approach is to use Flatten layer somewhere in your model (possibly right after the embedding layer). This way you would have a 2D ouput of shape (None, 8) which is what you want and is consistent with the shape of labels.



          However, note that you may end up with a very big model (i.e. too many parameters) which would be highly prone to overfitting. Either reduce the number of units in the Dense layers or alternatively use Conv1D and MaxPooling1D layers or even RNN layers to process the embeddings and reduce the dimensionality of resulting tensors (which is also probable that using them would also increase the accuracy of the model as well).






          share|improve this answer





















          • Thanks! I went with Conv1D model and it worked fine.
            – Enthusiast
            Nov 27 at 10:38
















          1














          Look at the output shape of the last layer in model summary: it is (None, 100, 8). This is not what you are looking for. Your labels for each sample have a shape of (8,) and not (100,8). Why this happened? That's because the Dense layer is applied on the last axis of its input and therefore since the output of Embedding layer is 3D, the output of all the following Dense layers would also have 3 dimension.



          How to resolve this? One approach is to use Flatten layer somewhere in your model (possibly right after the embedding layer). This way you would have a 2D ouput of shape (None, 8) which is what you want and is consistent with the shape of labels.



          However, note that you may end up with a very big model (i.e. too many parameters) which would be highly prone to overfitting. Either reduce the number of units in the Dense layers or alternatively use Conv1D and MaxPooling1D layers or even RNN layers to process the embeddings and reduce the dimensionality of resulting tensors (which is also probable that using them would also increase the accuracy of the model as well).






          share|improve this answer





















          • Thanks! I went with Conv1D model and it worked fine.
            – Enthusiast
            Nov 27 at 10:38














          1












          1








          1






          Look at the output shape of the last layer in model summary: it is (None, 100, 8). This is not what you are looking for. Your labels for each sample have a shape of (8,) and not (100,8). Why this happened? That's because the Dense layer is applied on the last axis of its input and therefore since the output of Embedding layer is 3D, the output of all the following Dense layers would also have 3 dimension.



          How to resolve this? One approach is to use Flatten layer somewhere in your model (possibly right after the embedding layer). This way you would have a 2D ouput of shape (None, 8) which is what you want and is consistent with the shape of labels.



          However, note that you may end up with a very big model (i.e. too many parameters) which would be highly prone to overfitting. Either reduce the number of units in the Dense layers or alternatively use Conv1D and MaxPooling1D layers or even RNN layers to process the embeddings and reduce the dimensionality of resulting tensors (which is also probable that using them would also increase the accuracy of the model as well).






          share|improve this answer












          Look at the output shape of the last layer in model summary: it is (None, 100, 8). This is not what you are looking for. Your labels for each sample have a shape of (8,) and not (100,8). Why this happened? That's because the Dense layer is applied on the last axis of its input and therefore since the output of Embedding layer is 3D, the output of all the following Dense layers would also have 3 dimension.



          How to resolve this? One approach is to use Flatten layer somewhere in your model (possibly right after the embedding layer). This way you would have a 2D ouput of shape (None, 8) which is what you want and is consistent with the shape of labels.



          However, note that you may end up with a very big model (i.e. too many parameters) which would be highly prone to overfitting. Either reduce the number of units in the Dense layers or alternatively use Conv1D and MaxPooling1D layers or even RNN layers to process the embeddings and reduce the dimensionality of resulting tensors (which is also probable that using them would also increase the accuracy of the model as well).







          share|improve this answer












          share|improve this answer



          share|improve this answer










          answered Nov 23 at 12:26









          today

          9,61121535




          9,61121535












          • Thanks! I went with Conv1D model and it worked fine.
            – Enthusiast
            Nov 27 at 10:38


















          • Thanks! I went with Conv1D model and it worked fine.
            – Enthusiast
            Nov 27 at 10:38
















          Thanks! I went with Conv1D model and it worked fine.
          – Enthusiast
          Nov 27 at 10:38




          Thanks! I went with Conv1D model and it worked fine.
          – Enthusiast
          Nov 27 at 10:38


















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