Piping bzip2 output into tdbloader2 (apache-jena) gives “File does not exist”
I want to pipe the output from bzip2 and use it as an input to fill a TDB database using tbdloader2 from apache-jena-3.9.0.
I already found
Generating TDB Dataset from archive containing N-TRIPLES files
but the proposed solution there did not work for me.
bzip2 -dc test.ttl.bz2 | tdbloader2 --loc=/pathto/TDBdatabase_test -- -
produces
20:08:01 INFO -- TDB Bulk Loader Start
20:08:01 INFO Data Load Phase
20:08:01 INFO Got 1 data files to load
20:08:01 INFO Data file 1: /home/user/-
File does not exist: /home/user/-
20:08:01 ERROR Failed during data phase
Similar results I got with with (inspired by https://unix.stackexchange.com/questions/16990/using-data-read-from-a-pipe-instead-than-from-a-file-in-command-options)
bzip2 -dc test.ttl.bz2 | tdbloader2 --loc=/pathto/TDBdatabase_test /dev/stdin
20:34:45 INFO -- TDB Bulk Loader Start
20:34:45 INFO Data Load Phase
20:34:45 INFO Got 1 data files to load
20:34:45 INFO Data file 1: /proc/16256/fd/pipe:[92062]
File does not exist: /proc/16256/fd/pipe:[92062]
20:34:45 ERROR Failed during data phase
and
bzip2 -dc test.ttl.bz2 | tdbloader2 --loc=/pathto/TDBdatabase_test /dev/fd/0
20:34:52 INFO -- TDB Bulk Loader Start
20:34:52 INFO Data Load Phase
20:34:52 INFO Got 1 data files to load
20:34:52 INFO Data file 1: /proc/16312/fd/pipe:[97432]
File does not exist: /proc/16312/fd/pipe:[97432]
20:34:52 ERROR Failed during data phase
unpacking the bz2 file manually and then adding it works fine:
bzip2 -d test.ttl.bz2
tdbloader2 --loc=/pathto/TDBdatabase_test test.ttl
Would be great if someone could point me in the right direction.
bash pipe jena
asked Nov 25 '18 at 15:09
markusmarkus
31
add a comment |
I want to pipe the output from bzip2 and use it as an input to fill a TDB database using tbdloader2 from apache-jena-3.9.0.
I already found
Generating TDB Dataset from archive containing N-TRIPLES files
but the proposed solution there did not work for me.
bzip2 -dc test.ttl.bz2 | tdbloader2 --loc=/pathto/TDBdatabase_test -- -
produces
20:08:01 INFO -- TDB Bulk Loader Start
20:08:01 INFO Data Load Phase
20:08:01 INFO Got 1 data files to load
20:08:01 INFO Data file 1: /home/user/-
File does not exist: /home/user/-
20:08:01 ERROR Failed during data phase
Similar results I got with with (inspired by https://unix.stackexchange.com/questions/16990/using-data-read-from-a-pipe-instead-than-from-a-file-in-command-options)
bzip2 -dc test.ttl.bz2 | tdbloader2 --loc=/pathto/TDBdatabase_test /dev/stdin
20:34:45 INFO -- TDB Bulk Loader Start
20:34:45 INFO Data Load Phase
20:34:45 INFO Got 1 data files to load
20:34:45 INFO Data file 1: /proc/16256/fd/pipe:[92062]
File does not exist: /proc/16256/fd/pipe:[92062]
20:34:45 ERROR Failed during data phase
and
bzip2 -dc test.ttl.bz2 | tdbloader2 --loc=/pathto/TDBdatabase_test /dev/fd/0
20:34:52 INFO -- TDB Bulk Loader Start
20:34:52 INFO Data Load Phase
20:34:52 INFO Got 1 data files to load
20:34:52 INFO Data file 1: /proc/16312/fd/pipe:[97432]
File does not exist: /proc/16312/fd/pipe:[97432]
20:34:52 ERROR Failed during data phase
unpacking the bz2 file manually and then adding it works fine:
bzip2 -d test.ttl.bz2
tdbloader2 --loc=/pathto/TDBdatabase_test test.ttl
Would be great if someone could point me in the right direction.
bash pipe jena
asked Nov 25 '18 at 15:09
markusmarkus
31
1
Your question is better suited to Super User. Stack Overflow is a question and answer site for professional and enthusiast programmers.
– Cyrus
Nov 25 '18 at 15:12
add a comment |
I want to pipe the output from bzip2 and use it as an input to fill a TDB database using tbdloader2 from apache-jena-3.9.0.
I already found
Generating TDB Dataset from archive containing N-TRIPLES files
but the proposed solution there did not work for me.
bzip2 -dc test.ttl.bz2 | tdbloader2 --loc=/pathto/TDBdatabase_test -- -
produces
20:08:01 INFO -- TDB Bulk Loader Start
20:08:01 INFO Data Load Phase
20:08:01 INFO Got 1 data files to load
20:08:01 INFO Data file 1: /home/user/-
File does not exist: /home/user/-
20:08:01 ERROR Failed during data phase
Similar results I got with with (inspired by https://unix.stackexchange.com/questions/16990/using-data-read-from-a-pipe-instead-than-from-a-file-in-command-options)
bzip2 -dc test.ttl.bz2 | tdbloader2 --loc=/pathto/TDBdatabase_test /dev/stdin
20:34:45 INFO -- TDB Bulk Loader Start
20:34:45 INFO Data Load Phase
20:34:45 INFO Got 1 data files to load
20:34:45 INFO Data file 1: /proc/16256/fd/pipe:[92062]
File does not exist: /proc/16256/fd/pipe:[92062]
20:34:45 ERROR Failed during data phase
and
bzip2 -dc test.ttl.bz2 | tdbloader2 --loc=/pathto/TDBdatabase_test /dev/fd/0
20:34:52 INFO -- TDB Bulk Loader Start
20:34:52 INFO Data Load Phase
20:34:52 INFO Got 1 data files to load
20:34:52 INFO Data file 1: /proc/16312/fd/pipe:[97432]
File does not exist: /proc/16312/fd/pipe:[97432]
20:34:52 ERROR Failed during data phase
unpacking the bz2 file manually and then adding it works fine:
bzip2 -d test.ttl.bz2
tdbloader2 --loc=/pathto/TDBdatabase_test test.ttl
Would be great if someone could point me in the right direction.
bash pipe jena
asked Nov 25 '18 at 15:09
markusmarkus
31
I want to pipe the output from bzip2 and use it as an input to fill a TDB database using tbdloader2 from apache-jena-3.9.0.
I already found
Generating TDB Dataset from archive containing N-TRIPLES files
but the proposed solution there did not work for me.
bzip2 -dc test.ttl.bz2 | tdbloader2 --loc=/pathto/TDBdatabase_test -- -
produces
20:08:01 INFO -- TDB Bulk Loader Start
20:08:01 INFO Data Load Phase
20:08:01 INFO Got 1 data files to load
20:08:01 INFO Data file 1: /home/user/-
File does not exist: /home/user/-
20:08:01 ERROR Failed during data phase
Similar results I got with with (inspired by https://unix.stackexchange.com/questions/16990/using-data-read-from-a-pipe-instead-than-from-a-file-in-command-options)
bzip2 -dc test.ttl.bz2 | tdbloader2 --loc=/pathto/TDBdatabase_test /dev/stdin
20:34:45 INFO -- TDB Bulk Loader Start
20:34:45 INFO Data Load Phase
20:34:45 INFO Got 1 data files to load
20:34:45 INFO Data file 1: /proc/16256/fd/pipe:[92062]
File does not exist: /proc/16256/fd/pipe:[92062]
20:34:45 ERROR Failed during data phase
and
bzip2 -dc test.ttl.bz2 | tdbloader2 --loc=/pathto/TDBdatabase_test /dev/fd/0
20:34:52 INFO -- TDB Bulk Loader Start
20:34:52 INFO Data Load Phase
20:34:52 INFO Got 1 data files to load
20:34:52 INFO Data file 1: /proc/16312/fd/pipe:[97432]
File does not exist: /proc/16312/fd/pipe:[97432]
20:34:52 ERROR Failed during data phase
unpacking the bz2 file manually and then adding it works fine:
bzip2 -d test.ttl.bz2
tdbloader2 --loc=/pathto/TDBdatabase_test test.ttl
Would be great if someone could point me in the right direction.
bash pipe jena
bash pipe jena
asked Nov 25 '18 at 15:09
markusmarkus
31
asked Nov 25 '18 at 15:09
markusmarkus
31
asked Nov 25 '18 at 15:09
markusmarkus
31
asked Nov 25 '18 at 15:09
markusmarkus
31
asked Nov 25 '18 at 15:09
markusmarkus
31
31
1
Your question is better suited to Super User. Stack Overflow is a question and answer site for professional and enthusiast programmers.
– Cyrus
Nov 25 '18 at 15:12
add a comment |
1
Your question is better suited to Super User. Stack Overflow is a question and answer site for professional and enthusiast programmers.
– Cyrus
Nov 25 '18 at 15:12
1
1
Your question is better suited to Super User. Stack Overflow is a question and answer site for professional and enthusiast programmers.
– Cyrus
Nov 25 '18 at 15:12
Your question is better suited to Super User. Stack Overflow is a question and answer site for professional and enthusiast programmers.
– Cyrus
Nov 25 '18 at 15:12
add a comment |
1 Answer
1
active
oldest
votes
tdbloader2 accepts bz2 compressed files on the command line:
tdbloader2 --loc=/pathto/TDBdatabase_test test.ttl.bz2
It doesn't accept input from a pipe - and if it did, then it would not know the syntax is Turtle which it gets from the file extension.
answered Nov 25 '18 at 22:19
AndySAndyS
12.8k1117
thank you. works. I didn't think about it as feeding zipped files didn't work when using fuseki.
– markus
Nov 26 '18 at 3:29
bz2 and gz are a single file compression tools; zip is an archive where the individual entries have separate names. c.f. tar The names matter for reading files to get the syntax. zip files could be supported; it is unpacking and reading each file but the base URI is going to be weird. (yes, gz can have several files, but it isn't an archive as such.)
– AndyS
Nov 26 '18 at 9:40
add a comment |
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1 Answer
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1 Answer
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oldest
votes
tdbloader2 accepts bz2 compressed files on the command line:
tdbloader2 --loc=/pathto/TDBdatabase_test test.ttl.bz2
It doesn't accept input from a pipe - and if it did, then it would not know the syntax is Turtle which it gets from the file extension.
answered Nov 25 '18 at 22:19
AndySAndyS
12.8k1117
thank you. works. I didn't think about it as feeding zipped files didn't work when using fuseki.
– markus
Nov 26 '18 at 3:29
bz2 and gz are a single file compression tools; zip is an archive where the individual entries have separate names. c.f. tar The names matter for reading files to get the syntax. zip files could be supported; it is unpacking and reading each file but the base URI is going to be weird. (yes, gz can have several files, but it isn't an archive as such.)
– AndyS
Nov 26 '18 at 9:40
add a comment |
tdbloader2 accepts bz2 compressed files on the command line:
tdbloader2 --loc=/pathto/TDBdatabase_test test.ttl.bz2
It doesn't accept input from a pipe - and if it did, then it would not know the syntax is Turtle which it gets from the file extension.
answered Nov 25 '18 at 22:19
AndySAndyS
12.8k1117
thank you. works. I didn't think about it as feeding zipped files didn't work when using fuseki.
– markus
Nov 26 '18 at 3:29
bz2 and gz are a single file compression tools; zip is an archive where the individual entries have separate names. c.f. tar The names matter for reading files to get the syntax. zip files could be supported; it is unpacking and reading each file but the base URI is going to be weird. (yes, gz can have several files, but it isn't an archive as such.)
– AndyS
Nov 26 '18 at 9:40
add a comment |
tdbloader2 accepts bz2 compressed files on the command line:
tdbloader2 --loc=/pathto/TDBdatabase_test test.ttl.bz2
It doesn't accept input from a pipe - and if it did, then it would not know the syntax is Turtle which it gets from the file extension.
answered Nov 25 '18 at 22:19
AndySAndyS
12.8k1117
tdbloader2 accepts bz2 compressed files on the command line:
tdbloader2 --loc=/pathto/TDBdatabase_test test.ttl.bz2
It doesn't accept input from a pipe - and if it did, then it would not know the syntax is Turtle which it gets from the file extension.
answered Nov 25 '18 at 22:19
AndySAndyS
12.8k1117
answered Nov 25 '18 at 22:19
AndySAndyS
12.8k1117
answered Nov 25 '18 at 22:19
AndySAndyS
12.8k1117
answered Nov 25 '18 at 22:19
AndySAndyS
12.8k1117
12.8k1117
thank you. works. I didn't think about it as feeding zipped files didn't work when using fuseki.
– markus
Nov 26 '18 at 3:29
bz2 and gz are a single file compression tools; zip is an archive where the individual entries have separate names. c.f. tar The names matter for reading files to get the syntax. zip files could be supported; it is unpacking and reading each file but the base URI is going to be weird. (yes, gz can have several files, but it isn't an archive as such.)
– AndyS
Nov 26 '18 at 9:40
add a comment |
thank you. works. I didn't think about it as feeding zipped files didn't work when using fuseki.
– markus
Nov 26 '18 at 3:29
bz2 and gz are a single file compression tools; zip is an archive where the individual entries have separate names. c.f. tar The names matter for reading files to get the syntax. zip files could be supported; it is unpacking and reading each file but the base URI is going to be weird. (yes, gz can have several files, but it isn't an archive as such.)
– AndyS
Nov 26 '18 at 9:40
thank you. works. I didn't think about it as feeding zipped files didn't work when using fuseki.
– markus
Nov 26 '18 at 3:29
thank you. works. I didn't think about it as feeding zipped files didn't work when using fuseki.
– markus
Nov 26 '18 at 3:29
bz2 and gz are a single file compression tools; zip is an archive where the individual entries have separate names. c.f. tar The names matter for reading files to get the syntax. zip files could be supported; it is unpacking and reading each file but the base URI is going to be weird. (yes, gz can have several files, but it isn't an archive as such.)
– AndyS
Nov 26 '18 at 9:40
bz2 and gz are a single file compression tools; zip is an archive where the individual entries have separate names. c.f. tar The names matter for reading files to get the syntax. zip files could be supported; it is unpacking and reading each file but the base URI is going to be weird. (yes, gz can have several files, but it isn't an archive as such.)
– AndyS
Nov 26 '18 at 9:40
add a comment |
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Your question is better suited to Super User. Stack Overflow is a question and answer site for professional and enthusiast programmers.
– Cyrus
Nov 25 '18 at 15:12